Association of 18bp insertion/deletion polymorphism, at −2549 position of VEGF gene, with diabetic nephropathy in type 2 diabetes mellitus patients of North Indian population
© Amle et al.; licensee BioMed Central. 2015
Received: 24 October 2014
Accepted: 7 March 2015
Published: 27 March 2015
Vascular endothelial growth factor (VEGF) is a potent multifunctional cytokine which plays a key role in the pathogenesis of diabetic micro-vascular complications. Human VEGF gene is said to be highly polymorphic. Insertion/deletion (I/D) polymorphism of the 18 bp fragment at −2549 position of the promoter region in VEGF gene is said to be of particular interest. The study was aimed to evaluate association of Insertion/deletion (I/D) polymorphism of the 18 bp fragment at −2549 position of the promoter region in VEGF gene, with diabetic nephropathy in type 2 diabetes mellitus.
This cross sectional study enrolled 40 subjects each of diabetic nephropathy (DN), diabetes mellitus without nephropathy (DM) and normal control subjects. DNA was isolated from peripheral blood leukocytes. Genotyping of the VEGF gene insertion/ deletion (I/D) polymorphism was done by the polymerase chain reaction (PCR) methods. The frequency of VEGF alleles and genotype distribution were compared in diabetic nephropathy, uncomplicated diabetic and control groups.
DD genotype and D allele were found to be significantly associated with DN group (p = 0.009 and 0.02 respectively) in comparison to DM group. Also DD genotype conferred significant risk of diabetic nephropathy in DM group (OR = 4.2) (against combined frequency of ID and II genotype) so does D allele 2.09 (against I allele).
DD genotype and D allele in I/D polymorphism at −2549 position of VEGF gene is associated with increased susceptibility to diabetic nephropathy in north Indian population.
Diabetic nephropathy (DN) is the leading cause of chronic kidney disease in patients being prescribed renal replacement therapy  and is associated with increased cardiovascular mortality . 20%-40% of patients with type 2 diabetes mellitus (DM) ultimately develop nephropathy, but the reason why only some and not all patients with diabetes develop this complication is unknown [3,4]. Previously glycemic control and duration of diabetes were said to be the two principle causes of progression to DN, but variable outcomes in patients with relatively same glycemic status and duration of DM have indicated role of environmental factors and genetic susceptibility to the condition . Hyperglycaemia induced complex interactions between metabolic and hemodynamic changes, along with variable genetic predisposition, sets the stage for kidney injury, as for other diabetic complications . Relatively earlier onset of diabetes as compared to their European counterparts and increasing longevity amongst Asian population has been proposed to be leading to increased rate of complications, as a result of prolonged exposure to hyperglycaemia . Evidence of abnormal angiogenesis has been found in patients with DN in both type 1 and type 2 diabetes mellitus [8-10].
Vascular endothelial growth factor (VEGF), a potent multifunctional cytokine and highly conserved homodimeric glycoprotein, has been proposed to play key role in the pathogenesis of diabetic micro-vascular complications by virtue of its role in angiogenesis and micro-vascular permeability [11-13]. VEGF, also known as vascular permeability factor is one of the most potent inducers of micro vascular permeability . VEGF-A (also called VEGF), most predominant of the VEGF isoforms, have been shown to be significantly elevated in type 2 diabetic patients and the levels are positively correlated with urinary albumin creatinine ratio . Role of VEGF is well established in Diabetic retinopathy and has led to therapeutic application of this knowledge. Thus studies association of VEGF in diabetic nephropathy can be beneficial to this patient population. The genetic variations in the VEGF gene can influence levels of VEGF protein expression.
Several polymorphisms in VEGF gene have been studied in respect to DN and some of them have been associated with altered serum and urine levels of VEGF [16-20]. Human VEGF gene spans 16,272 bp on chromosome 6 (6p12). It consists of eight exons and it is said to be highly polymorphic . Insertion/deletion (I/D) polymorphism of the 18 bp fragment at −2549 position of the promoter region in VEGF gene has been implicated in a number of diseases with angiogenic basis and hence is of particular interest [22-24]. Asian Indian is ethnically distinct population with leading number of diabetic patients in the world. Concept of both the “thrifty genotypes” and “thrift phenotype” holds true for Indian population. This has been proposed to cause increased predisposition to Diabetes mellitus and thus to associated complications [25,26]. In this light there is need to study various Genetic associations of diabetes and diabetic complications in Indian population. The study was to evaluate association of Insertion/deletion (I/D) polymorphism of the 18 bp fragment, at −2549 position of the promoter region in VEGF gene, with diabetic nephropathy in north Indian population.
Design and subject
This case control study enrolled 40 subjects each with diabetic nephropathy (DN), type 2 diabetes mellitus without nephropathy (DM) and 40 normal control subjects. Type 2 diabetes was diagnosed on the basis of the WHO criteria . Diabetic nephropathy status was determined on the basis of questionnaires, clinical features and laboratory data. Albumin creatinine ratio was used to diagnose diabetic nephropathy and those having macroalbuminuria (ACR > 300 mg/g of creatinine) were included as diabetic nephropathy subjects. Subjects with history suggestive of urinary tract infection, nephrolithiasis, acute inflammatory diseases, hematologic diseases, neoplastic diseases and pregnancy were excluded from the study. Control subjects were 40 age and sex matched healthy volunteers with no history of diabetes or any major clinical disorders and had normal fasting plasma glucose level. Study was approved by ethical committee Maulana Azad Medical College and associated hospitals, New Delhi-110002, INDIA.
After obtaining informed written consent, medical history was elicited. 6 ml of fasting venous blood was obtained after overnight fasting for plasma glucose level, serum urea, creatinine, lipid profile and serum electrolyte estimation. Serum and whole blood (in EDTA containing vial) was stored at −80 degree for PCR. 10 ml of early morning spot urine sample was obtained for urinary microalbumin estimation. Plasma glucose, serum urea, creatinine, HDL, LDL, Triglycerides, Cholesterol level were estimated on Syncron DXC® clinical chemistry analyzer (Beckman Coulter Ltd. USA) by standard methods. Urinary microalbumin was assayed by turbidimetric method and urinary creatinine by Modified Jaffe’s method on Syncron CX5 clinical chemistry analyzer (Beckman Coulter Ltd. USA).
Determination of the VEGF genotype
The official gene symbol for the gene is VEGF-A, approved name is Vascular endothelial growth factor and location is chromosome6 (6p12). Polymorphism selected for the present study was Insertion/Deletion (I/D) polymorphism of 18 bp fragment at −2549 position of the promoter region in VEGF gene. It was located at the promoter region of VEGF gene based on its functional nature.
Primers: forward: 5′-GCTGAGAGTGGGGCTGACTAGGTA-3′ and
The data were analyzed using the statistical package SPSS (version 15). Quantitative variables were expressed as mean ± standard deviation or median depending on whether the data was normally distributed. Qualitative variables were expressed as number and percentage. Statistical differences between categorical data like gender, genotype distribution were tested using Chi Square test. Independent sample t test was used for qualitative variables and normally distributed variables like age, FBS, total cholesterol and triglycerides were analyzed by ANOVA (analysis of variance). Associations of genotypes and alleles were assessed as OR and 95% confidence intervals (CI). Differences by univariate methods (χ2 test, unpaired Student t test) were analyzed together in a logistic regression analysis to test for significant risk factors for diabetic nephropathy. Values less than or equal to 0.05 were considered statistically significant.
The distribution of the VEGF DD genotype was significantly different in patients with diabetic retinopathy compared with healthy controls, entire diabetic group and patients with no complications.
shows the baseline characteristics of the study population
Diabetes Mellitus (DM) (40)
Diabetic Nephropathy (DN) (40)
Duration of diabetes
FBS (mg %)
Total Cholesterol (mg %)
Triglyserides (mg %)
S. Urea (mg %)
S. Creatinine (mg %)
Urinary ACR (mg/g of creatinine)
Genotype and Allele frequencies of VEGF variants in controls , DM and DN groups
OR (95% C.I.) for DD genotype
O.R. (95% C.I.) for for D allele
The power of the present study for detecting the allelic differences between diabetic nephropathy group subjects and controls was calculated. It was found to be significant (96% with α-error = 0.05, two tailed).
In our study we discovered that DD polymorphism of 18 bp fragment at −2549 position of VEGF gene is significantly associated with diabetic nephropathy. We found significantly increased frequency of DD genotype in DN group Vs DM group (p = 0.009), whereas there was no statistically significant increase in frequency of DD genotype in DM group when compared with control group (p = 0.5). Control population here serves to represent the baseline frequency of genotype distribution in normal population, and our finding further emphasizes the fact that those subjects amongst diabetic population had DD genotype were at increased risk of diabetic nephropathy (OR = 4.2, 95% C.I. = 1.28-4.63). The risk was also found to be increased with D allele (OR = 2.21, 95% C.I. = 1.15-4.19) in all subjects with diabetes mellitus (DN + DM). This confers that DD genotype and D allele has increased frequency in DN group than both control and DM group and also is associated with significantly increased risk of diabetic nephropathy.
Explanation to this can be provided by the fact that VEGF by virtue of its property of increasing vascular permeability and angiogenesis plays important role in pathogenesis of diabetic micro-vascular complications. VEGF has been demonstrated in human kidney in podocytes, proximal and distal tubular cells and VEGF receptors are found in pre, post and glomerular region and on renal masengial cells . Hyperglycemia is said to increase VEGF expression by activating protein kinase C (PKC) . VEGF then leads to activation of many pathways and mediates its action by increasing vascular permeability, this particular action along with altered NO synthesis in diabetic milieu can lead to proteinurea . VEGF increases permeability by different mechanism which includes; increasing the diffusion rate of substances across a capillary, widening the junction between endothelial cells and increasing their fenestrations; inducing the formation of vesiculo-vacuolar organelles and caveolae . Other mechanisms proposed are; increased production of α3 chain of collagen, plasminogen activators and chemokine attractants, along with recruitment of macrophages .
VEGF gene has been found to be associated with diabetic micro vascular complications in studies with VEGF C (−634) G, VEGF (−460), VEGF + 405 and many other polymorphism [11,17,31]. Polymorphisms in promoter region are said to be associated with altered level of serum VEGF [30-34]. Current I/D polymorphism have been to date studied only in two studies, in relation to diabetic nephropathy, to the best of our knowledge [19,20]. Finding of the study by Yang et al.  goes in favor of our study which says that DD genotype is associated with diabetic nephropathy. Possible explanation given is that D allele is said to be associated with increased transcription of VEGF compared to I allele leading to raised serum levels, further causing the effects. Effect of DD genotype has been also found to be associated with increased serum levels of VEGF by Buraczynska et al. . Though the effect was not statistically significant, this was attributed to very small sample size (20 in each group). In contrast to our study Buraczynska et al.  reported no significant association of DD genotype in diabetic nephropathy subjects but they have suspected type II error in the study.
We conclude that, DD genotype and D allele in I/D polymorphism at −2549 position of VEGF gene is associated with increased susceptibility to diabetic nephropathy in north Indian population. Our study is the first study to assess this polymorphism in diabetic nephropathy subjects in Indian population and only second in world to do so to the best of our knowledge. We recommend multicentre studies with larger sample size and including serum VEGF levels to further establish and clarify the role of VEGF and I/D polymorphism in diabetic nephropathy.
- Gudbjörg A, Jensen ML, Bendix C, Hans-Henrik P, Peter H, Hansen TW, et al. Improved prognosis of diabetic nephropathy in type 1 diabetes. Kidney Int. 2015;87:417–26.View ArticleGoogle Scholar
- Valmadrid CT, Klein R, Moss SE, Klein BE. The risk of cardiovascular disease mortality associated with micro-albuminuria and gross proteinuria in persons with older-onset diabetes mellitus. Arch Intern Med. 2000;160:1093–100.View ArticlePubMedGoogle Scholar
- Dronavalli S, Duka I, Bakris GL. The pathogenesis of diabetic nephropathy. Nat Clin Pract Endocrinol Metab. 2008;4:444–52.View ArticlePubMedGoogle Scholar
- Makino H. Phenotypic modulation of the mesangium reflected by contractile proteins in diabetes. Diabetes. 2006;45:488–95.View ArticleGoogle Scholar
- Maeda S. Genetics of diabetic nephropathy. Ther Adv Cardiovasc Dis. 2008;2(5):363–71.View ArticlePubMedGoogle Scholar
- Ziyadeh FN. Mediators of diabetic renal disease: the case for TGF-β as the major mediator. J Am Soc Nephrol. 2004;15 Suppl 1:S55–7.View ArticlePubMedGoogle Scholar
- Ramachandran A, Snehalatha C, Shetty AS, Nanditha A. Trends in prevalence of diabetes in Asian countries. World J Diabetes. 2012;3(6):110–7.View ArticlePubMed CentralPubMedGoogle Scholar
- Osterby R, Nyberg G. New vessel formation in the renal corpuscles in advanced diabetic glomerulopathy. J Diabet Complications. 1987;1:122–7.View ArticlePubMedGoogle Scholar
- Hohenstein B, Hausknecht B, Boehmer K, Riess R, Brekken RA, Hugo CP. Local VEGF activity but not VEGF expression is tightly regulated during diabetic nephropathy in man. Kidney Int. 2006;69:1654–61.View ArticlePubMedGoogle Scholar
- Kanesaki Y, Suzuki D, Uehara G, Toyoda M, Katoh T, Sakai H, et al. Vascular endothelial growth factor gene expression is correlated with glomerular neovascularization in human diabetic nephropathy. Am J Kidney Dis. 2005;45:288–94.View ArticlePubMedGoogle Scholar
- Awata T, Inoue K, Kurihara S, Ohkubo T, Watanabe M, Inukai K, et al. A common polymorphism in the 5′-untranslated region of the VEGF gene is associated with diabetic retinopathy in type 2 diabetes. Diabetes. 2000;51:1635–9.View ArticleGoogle Scholar
- Gro¨ne HJ. Angiogenesis and vascular endothelial growth factor (VEGF): is it relevant in renal patients? Nephrol Dial Transplant. 1995;10:761–3.Google Scholar
- Ferrara N, Davis-Smyth T. The biology of vascular endothelial growth factor. Endocr Rev. 1997;18:4–25.View ArticlePubMedGoogle Scholar
- Senger DR, Galli SJ, Dvorak AM, Perruzzi CA, Harvey VS, Dvorak HF. Tumor cells secrete a vascular permeability factor that promotes accumulation of ascites fluid. Science. 1983;219:983–5.View ArticlePubMedGoogle Scholar
- Kim NH, Oh JH, Seo JA, Lee KW, Kim SG, Choi KM, et al. Vascular endothelial growth factor (VEGF) and soluble VEGF receptor FLT-1 in diabetic nephropathy. Kidney Int. 2005;67:167–77.View ArticlePubMedGoogle Scholar
- Bonnefond A, Saulnier PJ, Stathopoulou MG, Grarup N, Ndiaye NC, Roussel R, et al. What Is the contribution of Two genetic variants regulating VEGF levels to type 2 diabetes risk and to microvascular complications? PLoS One. 2012;8(2):1–5.Google Scholar
- Ray D, Mishra M, Ralph S, Read I, Davies R. Association of the VEGF gene with proliferative diabetic retinopathy but not proteinuria in diabetes. Diabetes. 2004;53:861–4.View ArticlePubMedGoogle Scholar
- Watson C, Nicholas JA, Bottomley MJ, Paul EC, Brenchley PE. Identification of polymorphisms with the vascular endothelial growth factor (VEGF) gene: correlation with variation in VEGF protein production. Cytokine. 2000;12(8):1232–5.View ArticlePubMedGoogle Scholar
- Buraczynska M, Ksiazek P, Baranowicz-Gaszczyk I, Jozwiak L. Association of the VEGF gene polymorphism with diabetic retinopathy in type 2 diabetes patients. Nephrol Dial Transplant. 2007;22(3):827–32.View ArticlePubMedGoogle Scholar
- Yang B, Cross DF, Ollerenshaw M, Millward BA, Demaine AG. Polymorphisms of the vascular endothelial growth factor and susceptibility to diabetic microvascular complications in patients with type 1 diabetes mellitus. J Diabetes Complications. 2003;17:1–6.View ArticlePubMedGoogle Scholar
- Harper SJ, Bates DO. VEGF-A splicing: the key to anti-angiogenic therapeutics? Nat Rev Cancer. 2008;8(11):880–7.View ArticlePubMed CentralPubMedGoogle Scholar
- Allanore Y, Borderie D, Airo P, Guiducci S, Czirják L, Nasonov EL, et al. Lack of association between three vascular endothelial growth factor gene polymorphisms and systemic sclerosis: results from a multicenter EUSTAR study of European Caucasian patients. Ann Rheum Dis. 2007;66:257–9.View ArticlePubMed CentralPubMedGoogle Scholar
- Fouad H, Mona A, Abdel H, Amira A, Abdel A. Vascular endothelial growth factor (VEGF) gene insertion/deletion polymorphism and diabetic retinopathy in patients with type 2 diabetes. J Am Sci. 2011;7(3):199–205.Google Scholar
- Aggarwal S, Parveen F, Faridi RM. Vascular endothelial growth factor gene polymorphisms in North Indian patients with recurrent miscarriages. Reprod BioMed Online. 2011;22:59–64.View ArticlePubMedGoogle Scholar
- Yajnik CS. Nutrient-mediated teratogenesis and fuel-mediated teratogenesis: two pathways of intrauterine pro-gramming of diabetes. Int J Gynaecol Obstet. 2009;104(S1):S27–31.View ArticlePubMedGoogle Scholar
- Neel JV. Diabetes mellitus: a “thrifty” genotype rendered detrimental by “progress”? 1962. Bull World Health Organ. 1999;77:694–703.PubMed CentralPubMedGoogle Scholar
- Simon M, Ro¨ckl W, Horning C, Grone EF, Theis H, Weich HA, et al. Receptors of vascular endothelial growth factor/vascular permeability factor (VEGF/VPF) in fetal and adult human kidney: localization and [125I]-VEGF bindingsites. J Am Soc Nephrol. 1998;9:1032–44.PubMedGoogle Scholar
- Williams B, Gallacher B, Patel H, Orme C. Glucose-induced protein kinase C activation regulates vascular permeability factor mRNA expression and peptide production by human vascular smooth muscle cells in vitro. Diabetes. 1997;46:1497–503.View ArticlePubMedGoogle Scholar
- Cooper ME, Vranes D, Youssef S, Stacker SA, Cox AJ, Rizkalla B, et al. Increased renal expression of vascular endothelial growth factor (VEGF) and its receptor VEGFR-2 in experimental diabetes. Diabetes. 1999;48:2229–39.View ArticlePubMedGoogle Scholar
- Weis SM, Cheresh DA. Pathophysiological consequences of VEGF-induced vascular permeability. Nature. 2005;437:497–504.View ArticlePubMedGoogle Scholar
- Awata T, Kurihara S, Takata N, Neda T, Lizuka H, Ohkubo T, et al. Functional VEGF C-634G polymorphism is associated with development of diabetic macular edema and correlated with macular retinal thickness in type 2 diabetes. Biochem Biophys Res Comm. 2005;333:679–85.View ArticlePubMedGoogle Scholar
- Renner W, Kotschan S, Hoffmann C, Obermayer-Pietsch B, Pilger E. A common 936 C/T mutation in the gene for vascular endothelial growth factor is associated with vascular endothelial growth factor plasma levels. J Vasc Res. 2000;37:443–8.View ArticlePubMedGoogle Scholar
- Brogan IJ, Khan N, Isaac K, Hutchinson JA, Pravica V, Hutchinson IV. Novel polymorphisms in the promoter and 50 UTR regions of the human vascular endothelial growth factor gene. Hum Immunol. 1999;60:1245–9.View ArticlePubMedGoogle Scholar
- Shahbazi M, Fryer AA, Pravica V, Brogan IJ, Ramsay HM, Hutchinson IV, et al. Vascular endothelial growth factor gene polymorphisms are associated with acute renal allograft rejection. J Am Soc Nephrol. 2002;13:260–4.PubMedGoogle Scholar
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